Hi Gnome, as Mark has pointed out, any undulations in fuel lines can have the effect of inhibiting initial flow. However, unless using solid lines, it is difficult to avoid some undulation, and I would think that is what you have.
But
You have also demonstrated (twice) that a minor movement of the aircraft is enough to establish initial flow, after which flow is as expected.
The Savannah fuel system is well thought out, and has proved to be very reliable in practise. In particular, the provision of a large header (with a level switch at the top to indicate if the header is not entirely full) works as an excellent buffer, should there be a momentary interruption of flow (unporting of tanks etc).
In short, provided you have laid your fuel lines flat, I would not be concerned at what you are seeing: if your experience matches that of thousands of Savannah owners, you will never see that low fuel indicator come on.